Package: PACVr 1.1.3

PACVr: Plastome Assembly Coverage Visualization

Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) <doi:10.1186/s12859-020-3475-0>.

Authors:Gregory Smith [ctb], Nils Jenke [ctb], Michael Gruenstaeudl [aut, cre]

PACVr_1.1.3.tar.gz
PACVr_1.1.3.zip(r-4.5)PACVr_1.1.3.zip(r-4.4)PACVr_1.1.3.zip(r-4.3)
PACVr_1.1.3.tgz(r-4.5-any)PACVr_1.1.3.tgz(r-4.4-any)
PACVr_1.1.3.tar.gz(r-4.5-noble)PACVr_1.1.3.tar.gz(r-4.4-noble)
PACVr_1.1.3.tgz(r-4.4-emscripten)PACVr_1.1.3.tgz(r-4.3-emscripten)
PACVr.pdf |PACVr.html
PACVr/json (API)

# Install 'PACVr' in R:
install.packages('PACVr', repos = c('https://michaelgruenstaeudl.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/michaelgruenstaeudl/pacvr/issues

On CRAN:

Conda:

5.61 score 3 stars 5 scripts 183 downloads 1 mentions 2 exports 65 dependencies

Last updated 4 months agofrom:16b9d09f8e. Checks:1 OK, 7 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 31 2025
R-4.5-winERRORMar 31 2025
R-4.5-macERRORMar 31 2025
R-4.5-linuxERRORMar 31 2025
R-4.4-winERRORMar 31 2025
R-4.4-macERRORMar 31 2025
R-4.4-linuxERRORMar 31 2025
R-4.3-winERRORMar 01 2025

Exports:PACVr.completeRCircos.Env

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitopsclicodetoolscpp11crayoncurlDelayedArraydplyrfansiformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgluehttrIRangesjsonlitelambda.rlatticelifecycleloggermagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigpurrrR6RCircosread.gbrentrezRhtslibrlangRsamtoolsS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXMLXVector

PACVr

Rendered fromPACVr_Vignette.Rnwusingutils::Sweaveon Mar 31 2025.

Last update: 2024-02-29
Started: 2019-07-05