Package: PACVr 1.1.3
PACVr: Plastome Assembly Coverage Visualization
Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) <doi:10.1186/s12859-020-3475-0>.
Authors:
PACVr_1.1.3.tar.gz
PACVr_1.1.3.zip(r-4.5)PACVr_1.1.3.zip(r-4.4)PACVr_1.1.3.zip(r-4.3)
PACVr_1.1.3.tgz(r-4.4-any)PACVr_1.1.3.tgz(r-4.3-any)
PACVr_1.1.3.tar.gz(r-4.5-noble)PACVr_1.1.3.tar.gz(r-4.4-noble)
PACVr_1.1.3.tgz(r-4.4-emscripten)PACVr_1.1.3.tgz(r-4.3-emscripten)
PACVr.pdf |PACVr.html✨
PACVr/json (API)
# Install 'PACVr' in R: |
install.packages('PACVr', repos = c('https://michaelgruenstaeudl.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/michaelgruenstaeudl/pacvr/issues
Last updated 4 months agofrom:f9f2311dc6. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 03 2024 |
R-4.5-win | NOTE | Sep 03 2024 |
R-4.5-linux | NOTE | Sep 03 2024 |
R-4.4-win | NOTE | Sep 03 2024 |
R-4.4-mac | NOTE | Sep 03 2024 |
R-4.3-win | NOTE | Sep 03 2024 |
R-4.3-mac | NOTE | Sep 03 2024 |
Exports:PACVr.completeRCircos.Env
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitopsclicodetoolscpp11crayoncurlDelayedArraydplyrfansiformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgluehttrIRangesjsonlitelambda.rlatticelifecycleloggermagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigpurrrR6RCircosread.gbrentrezRhtslibrlangRsamtoolsS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXMLXVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Execute the complete pipeline of 'PACVr' | PACVr.complete |
Export the custom environment 'RCircos.Env' | RCircos.Env |