Package: PACVr 1.1.3

PACVr: Plastome Assembly Coverage Visualization

Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) <doi:10.1186/s12859-020-3475-0>.

Authors:Gregory Smith [ctb], Nils Jenke [ctb], Michael Gruenstaeudl [aut, cre]

PACVr_1.1.3.tar.gz
PACVr_1.1.3.zip(r-4.5)PACVr_1.1.3.zip(r-4.4)PACVr_1.1.3.zip(r-4.3)
PACVr_1.1.3.tgz(r-4.4-any)PACVr_1.1.3.tgz(r-4.3-any)
PACVr_1.1.3.tar.gz(r-4.5-noble)PACVr_1.1.3.tar.gz(r-4.4-noble)
PACVr_1.1.3.tgz(r-4.4-emscripten)PACVr_1.1.3.tgz(r-4.3-emscripten)
PACVr.pdf |PACVr.html
PACVr/json (API)

# Install 'PACVr' in R:
install.packages('PACVr', repos = c('https://michaelgruenstaeudl.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/michaelgruenstaeudl/pacvr/issues

On CRAN:

2 exports 3 stars 2.19 score 66 dependencies 1 mentions 5 scripts 249 downloads

Last updated 4 months agofrom:f9f2311dc6. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 03 2024
R-4.5-winNOTESep 03 2024
R-4.5-linuxNOTESep 03 2024
R-4.4-winNOTESep 03 2024
R-4.4-macNOTESep 03 2024
R-4.3-winNOTESep 03 2024
R-4.3-macNOTESep 03 2024

Exports:PACVr.completeRCircos.Env

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitopsclicodetoolscpp11crayoncurlDelayedArraydplyrfansiformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgluehttrIRangesjsonlitelambda.rlatticelifecycleloggermagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigpurrrR6RCircosread.gbrentrezRhtslibrlangRsamtoolsS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXMLXVectorzlibbioc

PACVr

Rendered fromPACVr_Vignette.Rnwusingutils::Sweaveon Sep 03 2024.

Last update: 2024-02-29
Started: 2019-07-05