Package: PACVr 1.1.3

PACVr: Plastome Assembly Coverage Visualization

Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) <doi:10.1186/s12859-020-3475-0>.

Authors:Gregory Smith [ctb], Nils Jenke [ctb], Michael Gruenstaeudl [aut, cre]

PACVr_1.1.3.tar.gz
PACVr_1.1.3.zip(r-4.5)PACVr_1.1.3.zip(r-4.4)PACVr_1.1.3.zip(r-4.3)
PACVr_1.1.3.tgz(r-4.4-any)PACVr_1.1.3.tgz(r-4.3-any)
PACVr_1.1.3.tar.gz(r-4.5-noble)PACVr_1.1.3.tar.gz(r-4.4-noble)
PACVr_1.1.3.tgz(r-4.4-emscripten)PACVr_1.1.3.tgz(r-4.3-emscripten)
PACVr.pdf |PACVr.html
PACVr/json (API)

# Install 'PACVr' in R:
install.packages('PACVr', repos = c('https://michaelgruenstaeudl.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/michaelgruenstaeudl/pacvr/issues

On CRAN:

5.93 score 3 stars 5 scripts 219 downloads 1 mentions 2 exports 66 dependencies

Last updated 22 days agofrom:9f309d8282. Checks:OK: 1 ERROR: 5 NOTE: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 01 2024
R-4.5-winERRORNov 01 2024
R-4.5-linuxERRORNov 01 2024
R-4.4-winERRORNov 01 2024
R-4.4-macERRORNov 01 2024
R-4.3-winERRORNov 01 2024
R-4.3-macNOTEOct 26 2024

Exports:PACVr.completeRCircos.Env

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitopsclicodetoolscpp11crayoncurlDelayedArraydplyrfansiformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgluehttrIRangesjsonlitelambda.rlatticelifecycleloggermagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigpurrrR6RCircosread.gbrentrezRhtslibrlangRsamtoolsS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXMLXVectorzlibbioc

PACVr

Rendered fromPACVr_Vignette.Rnwusingutils::Sweaveon Nov 01 2024.

Last update: 2024-02-29
Started: 2019-07-05