Package: PACVr 1.1.5
PACVr: Plastome Assembly Coverage Visualization
Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) <doi:10.1186/s12859-020-3475-0>.
Authors:
PACVr_1.1.5.tar.gz
PACVr_1.1.5.zip(r-4.7-any)PACVr_1.1.5.zip(r-4.6-any)PACVr_1.1.5.zip(r-4.5-any)
PACVr_1.1.5.tgz(r-4.6-any)PACVr_1.1.5.tgz(r-4.5-any)
PACVr_1.1.5.tar.gz(r-4.7-any)PACVr_1.1.5.tar.gz(r-4.6-any)
PACVr_1.1.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
PACVr/json (API)
| # Install 'PACVr' in R: |
| install.packages('PACVr', repos = c('https://michaelgruenstaeudl.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/michaelgruenstaeudl/pacvr/issues
genome-analysisgenomicsgenomics-data-visualizationorganellesequencing-coverage
Last updated from:f753c33f71. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 240 | ||
| source / vignettes | OK | 202 | ||
| linux-release | NOTE | 220 | ||
| macos-release | NOTE | 213 | ||
| macos-oldrel | NOTE | 199 | ||
| windows-devel | NOTE | 241 | ||
| windows-release | NOTE | 237 | ||
| windows-oldrel | NOTE | 270 | ||
| wasm-release | OK | 122 |
Exports:PACVr.completeRCircos.Env
Dependencies:askpassBHBiocGenericsBiocParallelBiostringsbitopscigarilloclicodetoolscpp11crayoncurldplyrformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangesgluehttrIRangesjsonlitelambda.rlifecycleloggermagrittrmimeopensslpillarpkgconfigpurrrpwalignR6RCircosread.gbrentrezRhtslibrlangRsamtoolsS4VectorsSeqinfosnowstringistringrsystibbletidyrtidyselectutf8vctrswithrXMLXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Execute the complete pipeline of 'PACVr' | PACVr.complete |
| Export the custom environment 'RCircos.Env' | RCircos.Env |
