Package: PACVr
Version: 1.1.5
Date: 2026-04-17
Title: Plastome Assembly Coverage Visualization
Authors@R: c(person("Michael", "Gruenstaeudl", role=c("aut", "cre"), email="m_gruenstaeudl@fhsu.edu", comment=c(ORCID="0000-0002-1666-1773")),
			 person("Gregory", "Smith", role=c("ctb")),
             person("Nils", "Jenke", role=c("ctb"))
             )
Maintainer: Michael Gruenstaeudl <m_gruenstaeudl@fhsu.edu>
Depends: R (>= 3.5.0)
Imports: Biostrings (>= 2.48.0), dplyr, GenomicAlignments (>= 1.18.1),
        GenomicRanges, IRanges, logger, read.gb (>= 2.2), RCircos (>=
        1.2.0), grDevices, stats, utils, tidyr, pwalign, R6
Description: Visualizes the coverage depth of a complete plastid genome
        as well as the equality of its inverted repeat regions in
        relation to the circular, quadripartite genome structure and
        the location of individual genes. For more information, please
        see Gruenstaeudl and Jenke (2020)
        <doi:10.1186/s12859-020-3475-0>.
License: BSD 3-clause License + file LICENSE
RoxygenNote: 7.3.3
URL: https://github.com/michaelgruenstaeudl/PACVr
BugReports: https://github.com/michaelgruenstaeudl/PACVr/issues
Suggests: testthat (>= 3.0.0), rentrez
Config/testthat/edition: 3
Encoding: UTF-8
Config/pak/sysreqs: libbz2-dev libicu-dev liblzma-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://michaelgruenstaeudl.r-universe.dev
Date/Publication: 2026-04-18 01:04:04 UTC
RemoteUrl: https://github.com/michaelgruenstaeudl/software_pacvr
RemoteRef: HEAD
RemoteSha: f753c33f71eb629c9be625487bf27370b5637a0d
NeedsCompilation: no
Packaged: 2026-10-10 15:43:25 UTC; root
Author: Michael Gruenstaeudl [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-1666-1773>),
  Gregory Smith [ctb],
  Nils Jenke [ctb]